Publications – Page 28 – Instituto de Biología Celular y Molecular de Plantas (IBMCP)

Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins

Marín-de la Rosa N, Pfeiffer A, Hill K, Locascio A, Bhalerao RP, Miskolczi P, Grønlund AL, Wanchoo-Kohli A, Thomas SG, Bennett MJ, Lohmann JU, Blázquez MA, Alabadí D.

PLoS Genet. 2015 Jul 2;11(7):e1005337. doi: 10.1371/journal.pgen.1005337. eCollection 2015 Jul.

2015

Global-scale computational analysis of genomic sequences reveals the recombination pattern and coevolution dynamics of cereal-infecting geminiviruses

Wu B, Shang X, Schubert J, Habekuß A, Elena SF, Wang X.

Sci Rep. 2015 Jan 30;5:8153. doi: 10.1038/srep08153.

2015

Function of glutathione peroxidases in legume root nodules

Matamoros MA, Saiz A, Peñuelas M, Bustos-Sanmamed P, Mulet JM, Barja MV, Rouhier N, Moore M, James EK, Dietz KJ, Becana M.

J Exp Bot. 2015 May;66(10):2979-90. doi: 10.1093/jxb/erv066. Epub 2015 Mar 4.

2015

Variability of candidate genes, genetic structure and association with sugar accumulation and climacteric behavior in a broad germplasm collection of melon (Cucumis melo L.)

Leida C, Moser C, Esteras C, Sulpice R, Lunn JE, de Langen F, Monforte AJ, Picó B.

BMC Genet. 2015 Mar 19;16:28. doi: 10.1186/s12863-015-0183-2.

2015

A pospiviroid from symptomless portulaca plants closely related to iresine viroid 1

Verhoeven JT, Roenhorst JW, Hooftman M, Meekes ET, Flores R, Serra P.

Virus Res. 2015 Jul 2;205:22-6. doi: 10.1016/j.virusres.2015.05.005. Epub 2015 May 16.

2015

Key importance of small RNA binding for the activity of a glycine-tryptophan (GW) motif-containing viral suppressor of RNA silencing

Pérez-Cañamás M, Hernández C.

J Biol Chem. 2015 Jan 30;290(5):3106-20. doi: 10.1074/jbc.M114.593707. Epub 2014 Dec 10.

2015

Uptake of inorganic phosphate is a limiting factor for Saccharomyces cerevisiae during growth at low temperatures

Vicent I, Navarro A, Mulet JM, Sharma S, Serrano R.

FEMS Yeast Res. 2015 May;15(3):fov008. doi: 10.1093/femsyr/fov008. Epub 2015 Feb 26.

2015

Toxicity, mutagenicity and transport in Saccharomyces cerevisiae of three popular DNA intercalating fluorescent dyes

Sayas E, García-López F, Serrano R.

Yeast. 2015 Sep;32(9):595-606. doi: 10.1002/yea.3081. Epub 2015 Jul 21.

2015

TCP14 and TCP15 mediate the promotion of seed germination by gibberellins in Arabidopsis thaliana

Resentini F, Felipo-Benavent A, Colombo L, Blázquez MA, Alabadí D, Masiero S.

Mol Plant. 2015 Mar;8(3):482-5. doi: 10.1016/j.molp.2014.11.018. Epub 2014 Dec 17.

2015

The origins of mutational robustness

Fares MA.

Trends Genet. 2015 Jul;31(7):373-81. doi: 10.1016/j.tig.2015.04.008. Epub 2015 May 23.

2015

Protein kinase GCN2 mediates responses to glyphosate in Arabidopsis

Faus I, Zabalza A, Santiago J, Nebauer SG, Royuela M, Serrano R, Gadea J.

BMC Plant Biol. 2015 Jan 21;15:14. doi: 10.1186/s12870-014-0378-0.

2015

Temporal dynamics of intrahost molecular evolution for a plant RNA virus

Cuevas JM, Willemsen A, Hillung J, Zwart MP, Elena SF.

Mol Biol Evol. 2015 May;32(5):1132-47. doi: 10.1093/molbev/msv028. Epub 2015 Feb 6.

2015

Silencing C19-GA 2-oxidases induces parthenocarpic development and inhibits lateral branching in tomato plants

Martínez-Bello L, Moritz T, López-Díaz I.

J Exp Bot. 2015 Sep;66(19):5897-910. doi: 10.1093/jxb/erv300. Epub 2015 Jun 19.

2015

Mutation at the tomato excessive number of floral organs (ENO) locus impairs floral meristem development, thus promoting an increased number of floral organs and fruit size

Fernández-Lozano A, Yuste-Lisbona FJ, Pérez-Martín F, Pineda B, Moreno V, Lozano R, Angosto T.

Plant Sci. 2015 Mar;232:41-8. doi: 10.1016/j.plantsci.2014.12.007. Epub 2014 Dec 15.

2015

A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants

Vera-Sirera F, De Rybel B, Úrbez C, Kouklas E, Pesquera M, Álvarez-Mahecha JC, Minguet EG, Tuominen H, Carbonell J, Borst JW, Weijers D, Blázquez MA.

Dev Cell. 2015 Nov 23;35(4):432-43. doi: 10.1016/j.devcel.2015.10.022.

2015

Genetic variability and evolutionary analysis of parietaria mottle virus: role of selection and genetic exchange

Galipienso L, Martínez C, Willemsen A, Alfaro-Férnandez A, Ambrosio IF, Davino S, Rubio L.

Arch Virol. 2015 Oct;160(10):2611-6. doi: 10.1007/s00705-015-2550-8. Epub 2015 Aug 4.

2015

The IDA Peptide Controls Abscission in Arabidopsis and Citrus

Estornell LH, Wildhagen M, Pérez-Amador MA, Talón M, Tadeo FR, Butenko MA.

Front Plant Sci. 2015 Nov 19;6:1003. doi: 10.3389/fpls.2015.01003. eCollection 2015.

2015

Antiviral roles of plant ARGONAUTES

Carbonell A, Carrington JC.

Curr Opin Plant Biol. 2015 Oct;27:111-7. doi: 10.1016/j.pbi.2015.06.013. Epub 2015 Jul 17.

2015

Molecular Ecology: Trading defence for vigour

Carbonell A.

Nat Plants. 2015 Nov 3;1:15174. doi: 10.1038/nplants.2015.174.

2015

Standards for plant synthetic biology: a common syntax for exchange of DNA parts

Patron NJ, Orzaez D, Marillonnet S, Warzecha H, Matthewman C, Youles M, Raitskin O, Leveau A, Farré G, Rogers C, Smith A, Hibberd J, Webb AA, Locke J, Schornack S, Ajioka J, Baulcombe DC, Zipfel C, Kamoun S, Jones JD, Kuhn H, Robatzek S, Van Esse HP, Sanders D, Oldroyd G, Martin C, Field R, O'Connor S, Fox S, Wulff B, Miller B, Breakspear A, Radhakrishnan G, Delaux PM, Loqué D, Granell A, Tissier A, Shih P, Brutnell TP, Quick WP, Rischer H, Fraser PD, Aharoni A, Raines C, South PF, Ané JM, Hamberger BR, Langdale J, Stougaard J, Bouwmeester H, Udvardi M, Murray JA, Ntoukakis V, Schäfer P, Denby K, Edwards KJ, Osbourn A, Haseloff J.

New Phytol. 2015 Oct;208(1):13-9. doi: 10.1111/nph.13532. Epub 2015 Jul 14.

2015

Viroids, the simplest RNA replicons: How they manipulate their hosts for being propagated and how their hosts react for containing the infection

Flores R, Minoia S, Carbonell A, Gisel A, Delgado S, López-Carrasco A, Navarro B, Di Serio F.

Virus Res. 2015 Nov 2;209:136-45. doi: 10.1016/j.virusres.2015.02.027. Epub 2015 Mar 1.

2015

Wide-genome QTL mapping of fruit quality traits in a tomato RIL population derived from the wild-relative species Solanum pimpinellifolium L

Capel C, Fernández del Carmen A, Alba JM, Lima-Silva V, Hernández-Gras F, Salinas M, Boronat A, Angosto T, Botella MA, Fernández-Muñoz R, Granell A, Capel J, Lozano R.

Theor Appl Genet. 2015 Oct;128(10):2019-35. doi: 10.1007/s00122-015-2563-4. Epub 2015 Jul 12.

2015

Matters of Size: Genetic Bottlenecks in Virus Infection and Their Potential Impact on Evolution

Zwart MP, Elena SF.

Annu Rev Virol. 2015 Nov;2(1):161-79. doi: 10.1146/annurev-virology-100114-055135.

2015

Fitness Trade-Offs Determine the Role of the Molecular Chaperonin GroEL in Buffering Mutations

Sabater-Muñoz B, Prats-Escriche M, Montagud-Martínez R, López-Cerdán A, Toft C, Aguilar-Rodríguez J, Wagner A, Fares MA.

Mol Biol Evol. 2015 Oct;32(10):2681-93. doi: 10.1093/molbev/msv144. Epub 2015 Jun 27.

2015

Distribution of mutational fitness effects and of epistasis in the 5′ untranslated region of a plant RNA virus

Bernet GP, Elena SF.

BMC Evol Biol. 2015 Dec 7;15:274. doi: 10.1186/s12862-015-0555-2.

2015

Different Mechanisms Confer Gradual Control and Memory at Nutrient- and Stress-Regulated Genes in Yeast

Rienzo A, Poveda-Huertes D, Aydin S, Buchler NE, Pascual-Ahuir A, Proft M.

Mol Cell Biol. 2015 Nov;35(21):3669-83. doi: 10.1128/MCB.00729-15. Epub 2015 Aug 17.

2015

Nuclear localization of the dehydrin OpsDHN1 is determined by histidine-rich motif

Hernández-Sánchez IE, Maruri-López I, Ferrando A, Carbonell J, Graether SP, Jiménez-Bremont JF.

Front Plant Sci. 2015 Sep 7;6:702. doi: 10.3389/fpls.2015.00702. eCollection 2015.

2015

Viral Strain-Specific Differential Alterations in Arabidopsis Developmental Patterns

Sánchez F, Manrique P, Mansilla C, Lunello P, Wang X, Rodrigo G, López-González S, Jenner C, González-Melendi P, Elena SF, Walsh J, Ponz F.

Mol Plant Microbe Interact. 2015 Dec;28(12):1304-15. doi: 10.1094/MPMI-05-15-0111-R. Epub 2015 Dec 8.

2015

Plastidial Glycolytic Glyceraldehyde-3-Phosphate Dehydrogenase Is an Important Determinant in the Carbon and Nitrogen Metabolism of Heterotrophic Cells in Arabidopsis

Anoman AD, Muñoz-Bertomeu J, Rosa-Téllez S, Flores-Tornero M, Serrano R, Bueso E, Fernie AR, Segura J, Ros R.

Plant Physiol. 2015 Nov;169(3):1619-37. doi: 10.1104/pp.15.00696. Epub 2015 Jul 1.

2015

Exploring the Dynamics and Mutational Landscape of Riboregulation with a Minimal Synthetic Circuit in Living Cells

Rodrigo G, Majer E, Prakash S, Daròs JA, Jaramillo A, Poyatos JF.

Biophys J. 2015 Sep 1;109(5):1070-6. doi: 10.1016/j.bpj.2015.07.021.

2015