Publications – Page 28 – Instituto de Biología Celular y Molecular de Plantas (IBMCP)

Software-assisted stacking of gene modules using GoldenBraid 2.0 DNA-assembly framework

Vazquez-Vilar M, Sarrion-Perdigones A, Ziarsolo P, Blanca J, Granell A, Orzaez D.

Methods Mol Biol. 2015;1284:399-420. doi: 10.1007/978-1-4939-2444-8_20.

2015

A fungal transcription factor gene is expressed in plants from its own promoter and improves drought tolerance

Martínez F, Arif A, Nebauer SG, Bueso E, Ali R, Montesinos C, Brunaud V, Muñoz-Bertomeu J, Serrano R.

Planta. 2015 Jul;242(1):39-52. doi: 10.1007/s00425-015-2285-5. Epub 2015 Mar 26.

2015

Coordinated gene regulation in the initial phase of salt stress adaptation

Vanacloig-Pedros E, Bets-Plasencia C, Pascual-Ahuir A, Proft M.

J Biol Chem. 2015 Apr 17;290(16):10163-75. doi: 10.1074/jbc.M115.637264. Epub 2015 Mar 5.

2015

Leaf expansion in Arabidopsis is controlled by a TCP-NGA regulatory module likely conserved in distantly related species

Ballester P, Navarrete-Gómez M, Carbonero P, Oñate-Sánchez L, Ferrándiz C.

Physiol Plant. 2015 Sep;155(1):21-32. doi: 10.1111/ppl.12327. Epub 2015 Feb 28.

2015

Viroid RNA turnover: characterization of the subgenomic RNAs of potato spindle tuber viroid accumulating in infected tissues provides insights into decay pathways operating in vivo

Minoia S, Navarro B, Delgado S, Di Serio F, Flores R.

Nucleic Acids Res. 2015 Feb 27;43(4):2313-25. doi: 10.1093/nar/gkv034. Epub 2015 Feb 6.

2015

Metabolomic profiling of plant tissues

Rambla JL, López-Gresa MP, Bellés JM, Granell A.

Methods Mol Biol. 2015;1284:221-35. doi: 10.1007/978-1-4939-2444-8_11.

2015

Functional conservation of an ancestral Pellino protein in helminth species

Cluxton CD, Caffrey BE, Kinsella GK, Moynagh PN, Fares MA, Fallon PG.

Sci Rep. 2015 Jun 29;5:11687. doi: 10.1038/srep11687.

2015

Antiviral roles of plant ARGONAUTES

Carbonell A, Carrington JC.

Curr Opin Plant Biol. 2015 Oct;27:111-7. doi: 10.1016/j.pbi.2015.06.013. Epub 2015 Jul 17.

2015

Molecular Ecology: Trading defence for vigour

Carbonell A.

Nat Plants. 2015 Nov 3;1:15174. doi: 10.1038/nplants.2015.174.

2015

Standards for plant synthetic biology: a common syntax for exchange of DNA parts

Patron NJ, Orzaez D, Marillonnet S, Warzecha H, Matthewman C, Youles M, Raitskin O, Leveau A, Farré G, Rogers C, Smith A, Hibberd J, Webb AA, Locke J, Schornack S, Ajioka J, Baulcombe DC, Zipfel C, Kamoun S, Jones JD, Kuhn H, Robatzek S, Van Esse HP, Sanders D, Oldroyd G, Martin C, Field R, O'Connor S, Fox S, Wulff B, Miller B, Breakspear A, Radhakrishnan G, Delaux PM, Loqué D, Granell A, Tissier A, Shih P, Brutnell TP, Quick WP, Rischer H, Fraser PD, Aharoni A, Raines C, South PF, Ané JM, Hamberger BR, Langdale J, Stougaard J, Bouwmeester H, Udvardi M, Murray JA, Ntoukakis V, Schäfer P, Denby K, Edwards KJ, Osbourn A, Haseloff J.

New Phytol. 2015 Oct;208(1):13-9. doi: 10.1111/nph.13532. Epub 2015 Jul 14.

2015

Viroids, the simplest RNA replicons: How they manipulate their hosts for being propagated and how their hosts react for containing the infection

Flores R, Minoia S, Carbonell A, Gisel A, Delgado S, López-Carrasco A, Navarro B, Di Serio F.

Virus Res. 2015 Nov 2;209:136-45. doi: 10.1016/j.virusres.2015.02.027. Epub 2015 Mar 1.

2015

Wide-genome QTL mapping of fruit quality traits in a tomato RIL population derived from the wild-relative species Solanum pimpinellifolium L

Capel C, Fernández del Carmen A, Alba JM, Lima-Silva V, Hernández-Gras F, Salinas M, Boronat A, Angosto T, Botella MA, Fernández-Muñoz R, Granell A, Capel J, Lozano R.

Theor Appl Genet. 2015 Oct;128(10):2019-35. doi: 10.1007/s00122-015-2563-4. Epub 2015 Jul 12.

2015

Matters of Size: Genetic Bottlenecks in Virus Infection and Their Potential Impact on Evolution

Zwart MP, Elena SF.

Annu Rev Virol. 2015 Nov;2(1):161-79. doi: 10.1146/annurev-virology-100114-055135.

2015

Fitness Trade-Offs Determine the Role of the Molecular Chaperonin GroEL in Buffering Mutations

Sabater-Muñoz B, Prats-Escriche M, Montagud-Martínez R, López-Cerdán A, Toft C, Aguilar-Rodríguez J, Wagner A, Fares MA.

Mol Biol Evol. 2015 Oct;32(10):2681-93. doi: 10.1093/molbev/msv144. Epub 2015 Jun 27.

2015

Distribution of mutational fitness effects and of epistasis in the 5′ untranslated region of a plant RNA virus

Bernet GP, Elena SF.

BMC Evol Biol. 2015 Dec 7;15:274. doi: 10.1186/s12862-015-0555-2.

2015

Different Mechanisms Confer Gradual Control and Memory at Nutrient- and Stress-Regulated Genes in Yeast

Rienzo A, Poveda-Huertes D, Aydin S, Buchler NE, Pascual-Ahuir A, Proft M.

Mol Cell Biol. 2015 Nov;35(21):3669-83. doi: 10.1128/MCB.00729-15. Epub 2015 Aug 17.

2015

Nuclear localization of the dehydrin OpsDHN1 is determined by histidine-rich motif

Hernández-Sánchez IE, Maruri-López I, Ferrando A, Carbonell J, Graether SP, Jiménez-Bremont JF.

Front Plant Sci. 2015 Sep 7;6:702. doi: 10.3389/fpls.2015.00702. eCollection 2015.

2015

Viral Strain-Specific Differential Alterations in Arabidopsis Developmental Patterns

Sánchez F, Manrique P, Mansilla C, Lunello P, Wang X, Rodrigo G, López-González S, Jenner C, González-Melendi P, Elena SF, Walsh J, Ponz F.

Mol Plant Microbe Interact. 2015 Dec;28(12):1304-15. doi: 10.1094/MPMI-05-15-0111-R. Epub 2015 Dec 8.

2015

Plastidial Glycolytic Glyceraldehyde-3-Phosphate Dehydrogenase Is an Important Determinant in the Carbon and Nitrogen Metabolism of Heterotrophic Cells in Arabidopsis

Anoman AD, Muñoz-Bertomeu J, Rosa-Téllez S, Flores-Tornero M, Serrano R, Bueso E, Fernie AR, Segura J, Ros R.

Plant Physiol. 2015 Nov;169(3):1619-37. doi: 10.1104/pp.15.00696. Epub 2015 Jul 1.

2015

Exploring the Dynamics and Mutational Landscape of Riboregulation with a Minimal Synthetic Circuit in Living Cells

Rodrigo G, Majer E, Prakash S, Daròs JA, Jaramillo A, Poyatos JF.

Biophys J. 2015 Sep 1;109(5):1070-6. doi: 10.1016/j.bpj.2015.07.021.

2015

Characterization of maize spermine synthase 1 (ZmSPMS1): Evidence for dimerization and intracellular location

Maruri-López I, Hernández-Sánchez IE, Ferrando A, Carbonell J, Jiménez-Bremont JF.

Plant Physiol Biochem. 2015 Dec;97:264-71. doi: 10.1016/j.plaphy.2015.10.017. Epub 2015 Oct 22.

2015

The tomato res mutant which accumulates JA in roots in non-stressed conditions restores cell structure alterations under salinity

Garcia-Abellan JO, Fernandez-Garcia N, Lopez-Berenguer C, Egea I, Flores FB, Angosto T, Capel J, Lozano R, Pineda B, Moreno V, Olmos E, Bolarin MC.

Physiol Plant. 2015 Nov;155(3):296-314. doi: 10.1111/ppl.12320. Epub 2015 Feb 6.

2015

Inactivation of PYR/PYL/RCAR ABA receptors by tyrosine nitration may enable rapid inhibition of ABA signaling by nitric oxide in plants

Castillo MC, Lozano-Juste J, González-Guzmán M, Rodriguez L, Rodriguez PL, León J.

Sci Signal. 2015 Sep 1;8(392):ra89. doi: 10.1126/scisignal.aaa7981.

2015

The Tomato MIXTA-Like Transcription Factor Coordinates Fruit Epidermis Conical Cell Development and Cuticular Lipid Biosynthesis and Assembly

Lashbrooke J, Adato A, Lotan O, Alkan N, Tsimbalist T, Rechav K, Fernandez-Moreno JP, Widemann E, Grausem B, Pinot F, Granell A, Costa F, Aharoni A.

Plant Physiol. 2015 Dec;169(4):2553-71. doi: 10.1104/pp.15.01145. Epub 2015 Oct 6.

2015

Virus Satellites Drive Viral Evolution and Ecology

Frígols B, Quiles-Puchalt N, Mir-Sanchis I, Donderis J, Elena SF, Buckling A, Novick RP, Marina A, Penadés JR.

PLoS Genet. 2015 Oct 23;11(10):e1005609. doi: 10.1371/journal.pgen.1005609. eCollection 2015 Oct.

2015

A potyvirus vector efficiently targets recombinant proteins to chloroplasts, mitochondria and nuclei in plant cells when expressed at the amino terminus of the polyprotein

Majer E, Navarro JA, Daròs JA.

Biotechnol J. 2015 Sep;10(11):1792-802. doi: 10.1002/biot.201500042. Epub 2015 Jul 30.

2015

The impact of high-order epistasis in the within-host fitness of a positive-sense plant RNA virus

Lalić J, Elena SF.

J Evol Biol. 2015 Dec;28(12):2236-47. doi: 10.1111/jeb.12748. Epub 2015 Sep 22.

2015

Loss of a Conserved tRNA Anticodon Modification Perturbs Plant Immunity

Ramírez V, Gonzalez B, López A, Castelló MJ, Gil MJ, Etherington GJ, Zheng B, Chen P, Vera P.

PLoS Genet. 2015 Oct 22;11(10):e1005586. doi: 10.1371/journal.pgen.1005586. eCollection 2015 Oct.

2015

Survival and innovation: The role of mutational robustness in evolution

Fares MA.

Biochimie. 2015 Dec;119:254-61. doi: 10.1016/j.biochi.2014.10.019. Epub 2014 Oct 30.

2015

Transcriptome analysis of Phoenix canariensis Chabaud in response to Rhynchophorus ferrugineus Olivier attacks

Giovino A, Bertolini E, Fileccia V, Al Hassan M, Labra M, Martinelli F.

Front Plant Sci. 2015 Oct 14;6:817. doi: 10.3389/fpls.2015.00817. eCollection 2015.

2015