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Light and Shade Regulation of Plant Development

Light and Shade Regulation of Plant Development

Research line: Molecular mechanisms of development and morphogenesis

Light and Shade Regulation of Plant Development

Research line: Molecular mechanisms of development and morphogenesis

Light and Shade Regulation of Plant Development
  • Research
  • Staff
  • Publications
  • Projects
  • Other publications
  • Thesis

Research

In the lab, we are interested in understanding how environmental light conditions regulate plant development. Specifically, our research aims to learn how plants acclimate to the proximity of vegetation (close proximity of other plants might filter sunlight, resulting in light starvation). To understand this response at the genetic and molecular level, as a reference model system we employ Arabidopsis thaliana, a sun-loving plant that avoids vegetation proximity and shade by activating a set of responses collectively known as the shade avoidance syndrome (SAS). The most obvious SAS response is the induction of the hypocotyl elongation in A. thaliana seedlings and many other species. We have expanded our research to Cardamine hirsuta, a plant species closely related to A. thaliana that tolerates (instead of avoids) plant shade. Therefore, it can be used in similar genetics and molecular approaches as A. thaliana. Our comparative analyses between both species led us to conclude that tolerance to plant shade results from activating shade-responsive mechanisms that suppress hypocotyl elongation. In the long term, our research is expected to help us to understand how plants communicate to each other, a knowledge that will contribute to make the agrosystems more complex and, therefore, more resilient, an approach to transition towards a more sustainable agriculture. 

Staff

Publications

  • Vives Hernández K©, Moreno-Romero J, Hernández de la Torre M, Pérez C, Ríos D, Martínez-Garcia JF (2022). Effect of light intensity on steviol glycosides production in leaves of Stevia rebaudiana plants. Phytochemistry 194, 113027. Doi: 10.1016/j.phytochem.2021.113027.

  • Paulisic S; Qin W; Verasztó HA; Then S; Alary B; Nogue F; Tsiantis M; Hothorn M; Martínez-García JF (2021).  Adjustment of the PIF7-HFR1 transcriptional module activity controls plant shade adaptation. EMBO Journal 40, e104273

  • Morelli L, Paulisic S, Qin W, Iglesias-Sanchez A, Roig-Villanova I, Florez-Sarasa I, Rodriguez-Concepcion M©, Martínez-García JF© (2020)
    Light quality signals generated by vegetation shade facilitate acclimation to reduced light quantity in shade-avoider plants. Plant Physiology 186, 2137-2151

  • Rodriguez-Concepcion M, Martinez-Garcia JF (2020). Plant colors come to light. Biochemistry (Lond) 42, 46–50

  • Molina-Contreras MJ*, Paulisic S*, Then C*, Moreno-Romero J, Pastor-Andreu P, Morelli L., Roig-Villanova I, Jenkins H, Hallab A, Gan X, Gómez-Cadenas A, Tsiantis M, Rodríguez-Concepción M, Martínez-García JF© (2019). Photoreceptor activity contributes to contrasting responses to shade in Cardamine and Arabidopsis seedlings. The Plant Cell 31, 2649-2663. Doi: 10.1105/tpc.19.00275.

  • Ortiz-Alcaide M, Llamas E, Gómez-Cadenas A, Nagatani A, Martinez-Garcia JF©, Rodriguez-Concepción M© (2019). Chloroplasts modulate elongation responses to canopy shade by retrograde pathways involving HY5 and ABA. The Plant Cell 31, 384-398. Doi: 10.1105/tpc.18.00617.

Projects

CURRENT RESEARCH LINES – LÍNEAS de INVESTIGACIÓN EN CURSO:

Line/Línea 1. 2021/09 – 2024/08. Funded by research grant: “SHINE – Estudiando cómo las plantas prosperan en entornos de alta densidad vegetal (PID2020-115782GB-I00). Funded by MICIN – Convocatoria 2020 Proyectos de I+D+i – PGC Tipo B (235.950 €). A predoctoral contract was granted. PI, Jaume MARTINEZ-GARCIA. “Entidad Financiadora”: Proyecto PID2020-115782GB-I00 financiado por MCIN/ AEI /10.13039/501100011033. Fecha inicio: 01/09/2021; Fecha final: 31/12/2024 prórroga 4 meses.


Line/Línea 2. 2021/01 – 2024/12. Funded by research grant: “ENIGmA – Exploring Novel plant-to-plant Intercommunication pathways Governing environmental Acclimation (PROMETEU/2021/056). Funded Generalitat Valenciana (597.345 €). PIs, Jaume MARTINEZ-GARCIA and Purificación LISÓN PÁRRAGA.


Line/Línea 3. 2021/06 – 2024/05. Funded by research grant: UToPIQ – Use of Tomato lines tolerant to Proximity shade to Increase yield and Quality in intercropping agrosystems (PCI2021-121941). Funded by AEI – Call EC-H2020-PRIMA (Section 2, Call multi-topics 2020, Topic 2.2.1) (200.000 €). PI and coordinator, Manuel Rodriguez Concepción.


PAST RESEARCH LINES that were funded with the following grants – LÍNEAS de INVESTIGACIÓN ANTERIORES que se financiaron con los siguientes proyectos:

2019/05 – 2021/04. Postdoctoral contract for Jordi Moreno Romero (Horizon 2020 Framework Programme – Call H2020-MSCA-IF-2017 – Proposal N° 797473 “Epishade”). Funded by the European Comission (>170.000 €). PI: Jaume Martínez García


2017/05 – 2019/04. Research grant: Legoplant: generando organos nuevos en plantas – Legoplant: building new organs in plants (BIO2015-72093-EXP). Funded by Ministerio de Economía y Competitividad (MINECO) –modalidad 2: proyectos “Explora Ciencia” y “Explora Tecnología” (54,450 €). PI: Jaume Martínez García

01/2017 – 12/2019. Program “Suport als Grups de Recerca de Catalunya”, Grup de Recerca en regulació del desenvolupament. (2017SGR 1211)
Entidad financiadora: Agència de Gestió d’Ajuts Universitaris i de Recerca (AGAUR, Generalitat de Catalunya) (42,000 €)

IP: Paloma Mas Martínez


2015/01 – 2017/12. Research grant: “Variety of plant responses to vegetation proximity: studies of new components and molecular mechanisms” (BIO2014-59895-P)
Entidad financiadora: MINECO – I+D+i Excelencia 2014(169.500 €)
IP: Jaume Martínez García

2014 – 2016.Program “Suport als Grups de Recerca de Catalunya” (SGR-2014), Grup de Recerca en regulació del desenvolupament. (2014SGR 447)
Entidad financiadora: Agència de Gestió d’Ajuts Universitaris i de Recerca (AGAUR, Generalitat de Catalunya) (44,000 €)
IP: Paloma Mas Martínez

2014/10 – 2016/09. Postdoctoral contract for Irma Roig Villanova (Beatriu de Pinós Program, 2013BP_B 00134)

Entidad financiadora: AGAUR – Marie Curie COFUND (91,022.40 €)IP: Jaume Martínez García


2011/12 – 2015/12. Research grant: “Understanding the diversity of genetic networks regulating plant proximity responses in Arabidopsis thaliana and related species” (BIO2011-23489)
Entidad financiadora: MINECO – FEDER (248,050 €). An associated predoctoral FPI (Formación de Personal Investigador Program) fellowship was obtained.
IP: Jaume Martínez García

2010/03 – 2012/09. Postdoctoral contract for Christiane Then (Programme “PEOPLE” – Call FP7-PEOPLE-IEF-2008 – Proposal N° 237492 “ARABISHADE”)
Entidad financiadora: European Commission (210,933.51 €)
IP: Jaume Martínez García

2009 – 2013.Program “Suport als Grups de Recerca de Catalunya” (SGR-2009), Grup de Recerca en regulació del desenvolupament. (2009SGR 697)
Entidad financiadora: AGAUR (50,960 €)
IP: Paloma Mas Martínez

2008/12 – 2011/12. Research grant: “The shade avoidance syndrome in Arabidopsis: from master genes to regulatory modules” (BIO2008-0169)
Entidad financiadora: MINECO – FEDER (233,530 €). An associated predoctoral FPI fellowship was obtained
IP: Jaume Martínez García

2007/10 – 2012/12. CONSOLIDER grant: “Centro de Genómica básica y de orientación agroalimentaria” (CSD2007-00036)
Entidad financiadora: Ministerio de Educación y Ciencia
IP: Pere Puigdomenech Rosell

2005/12 – 2008/12. Research grant: “Genetic and spatial analysis of the shade avoidance syndrome in Arabidopsis thaliana” (BIO2005-00154)
Entidad financiadora: Ministerio de Educación y Ciencia – FEDER (154,700 €)
IP: Jaume Martínez García

2005 to 2008. Program “Suport als Grups de Recerca de Catalunya” (SGR-2005), Grup de Desenvolupament en Arabidopsis (2005 SGR 284)
Entidad financiadora: AGAUR (0 €)
IP: Paloma Mas Martínez

2005/01 – 2006/12. Postdoctoral contract for Dr. Jordi Bou Torrent (2004CRED-10003; 2005-CRED-00014)
Entidad financiadora: AGAUR
IP: Jaume Martínez García

2005/03 – 2007/02. Postdoctoral contract for Dr. Céline Sorin (2004CRED-00058; 2005CRED- 10002)
Entidad financiadora: AGAUR
IP: Jaume Martínez García

2004/10 – 2006/10. Travel grant: “Genetic analysis of changes in development in response to plant shade” (2004GB0016)
Entidad financiadora: Spanish CSIC and The Royal Society
IP: Jaume Martínez García (for the Spanish part)

2003/12 – 2005/12. Research grant “Molecular and physiological analysis of the shade avoidance syndrome in Arabidopsis thaliana” (BIO2002-00298)
Entidad financiadora: Ministerio de Ciencia y Tecnología – FEDER (103,500 €). An associated predoctoral FPI fellowship was obtained
IP: Jaume Martínez García

Other publications

  • Roig-Villanova I©, Paulišić S, Martinez-Garcia JF (2019). Shade avoidance and neighbour detection. In: Phytochromes: Methods and Protocols. (Editor, A. Hiltbrunner) Methods Mol Biol 2026, 157-168. Doi: 10.1007/978-1-4939-9612-4_13.
  • Gallemí M, Molina-Contreras MJ*, Paulišić S*, Salla-Martret M, Sorin C, Godoy M, Franco-Zorrilla JM, Solano R, Martínez-García JF© (2017). A DNA-binding independent activity for the Arabidopsis transcription factor ATHB4 in the regulation of vegetation proximity responses. New Phytol 216, 798-813. Doi: 10.1111/nph.14727.
  • Llorente B, Martinez-Garcia JF, Stange C, Rodriguez-Concepcion M (2017). Illuminating colors: regulation of carotenoid biosynthesis and accumulation by light. Curr Opin Plant Biol 37, 49-55. Doi: 10.1016/j.pbi.2017.03.011.
  • Paulišić S, Molina-Contreras MJ, Roig-Villanova I and Martinez-Garcia JF© (2017). Approaches to study light effects on brassinosteroid sensitivity. In: Brassinosteroids: Methods and Protocols (Editors, E Russinova & AI Caño-Delgado). Methods Mol Biol 1564, 39-47. doi: 10.1007/978-1-4939-6813-8_5.
  • Gallemí M*, Galstyan A*, Paulišić S, Then C, Ferrández-Ayela A, Lorenzo-Orts L, Roig-Villanova I, Wang X, Micol JL, Ponce MR, Devlin PF and Martínez-García JF© (2016). DRACULA2, a dynamic nucleoporin with a role in the regulation of the shade avoidance syndrome in Arabidopsis. Development 143, 1623-1631. Doi: 10.1242/dev.130211.
  • Roig-Villanova I© and Martínez-García JF© (2016). Plant responses to vegetation proximity: a whole life avoiding shade. Front Plant Sci 7, 236. Doi: 10.3389/fpls.2016.00236.
  • Bou-Torrent J*, Toledo-Ortiz G*, Ortiz-Alcaide M*, Cifuentes-Esquivel N, Halliday KJ, Martinez-García JF© and Rodriguez-Concepcion M© (2015). Regulation of carotenoid biosynthesis by shade relies on specific subsets of antagonistic transcription factors and co-factors. Plant Physiol 169, 1584-1594. doi: 10.1104/pp.15.00552.
  • Xie Y, Straub D, Eguen T, Brandt R, Stahl M, Martinez-Garcia JF and Wenkel S (2015). Meta-analysis of Arabidopsis KANADI1 direct target genes identifies basic growth-promoting module acting upstream of hormonal signaling pathways. Plant Physiol 169, 1240-1253. Doi: 10.1104/pp.15.00764.
  • Gallemí M and Martínez-García JF© (2015). “BZip and BHLH family members integrate transcriptional responses to light”. In: Plant Transcription Factors: Evolutionary, Structural and Functional Aspects (Ed. Daniel González). ISBN: 978-0-12-800854-6 Elsevier. pp. 329-342. http://dx.doi.org/10.1016/B978-0-12-800854-6.00021-X.
  • Martínez-García JF© Gallemí M, Molina-Contreras MJ, Llorente B, Bevilaqua MRR, and Quail PH (2014). The shade avoidance syndrome in Arabidopsis: the antagonistic role of phytochrome A and B differentiates vegetation proximity and canopy shade. PLOS One 9: e109275. Doi: 10.1371/journal.pone.0109275.
  • Bou-Torrent J*, Galstyan A*, Gallemí M, Cifuentes-Esquivel N, Molina-Contreras MJ, Salla-Martret M, Jikumaru Y, Yamaguchi S, Kamiya Y and Martínez-García JF© (2014). Plant proximity perception dynamically modulates hormone levels and sensitivity in Arabidopsis. J Exp Bot 56, 2937-2947. Doi: 10.1093/jxb/eru083.
  • Hay A, Pieper B, Cooke E, Mandáková T, Cartolano M, Tattersall A, Dello Ioio R, McGowan S, Barkoulas M, Galinha C, Rast M, Hofhuis H, Then C, Plieske J, Ganal M, Mott R, Martínez-García JF, Carine M, Scotland R, Gan X, Filatov D, Lysak M and Tsiantis M (2014). Cardamine hirsuta: a versatile genetic system for comparative studies. Plant J 78, 1-15. Doi: 10.1111/tpj.12447.
  • Cifuentes-Esquivel N, Bou-Torrent J©, Galstyan A, Galllemí M, Sessa G, Salla-Martret M, Roig-Villanova I, Ruberti I and Martínez-García JF© (2013). The bHLH proteins BEE and BIM positively modulate the shade avoidance syndrome in Arabidopsis seedlings. Plant J 75, 989-1002. Doi: 10.1111/tpj.12264.
  • Bou-Torrent J*, Salla-Martret M*, Brandt R, Musielak T, Palauqui JC, Martínez-García JF© and Wenkel S© (2012). ATHB4 and HAT3, two class II HD-ZIP transcription factors, control leaf development in Arabidopsis. Plant Signal Behav 7, 1382–1387 (open access). Doi: 10.4161/psb.21824.
  • Reymond MC, Brunoud G, Chauvet A, Martínez-García JF, Martin-Magniette ML, Moneger F and Scutt C (2012). A light-regulated genetic module was recruited to carpel development in flowering plants following a structural change to SPATULA. Plant Cell 24, 2812-2825. Doi: 10.1105/tpc.
  • Brandt R, Salla-Martret M, Bou-Torrent J, Musielak T, Stahl M, Lanz C, Ott F, Schmid M, Greb T, Schwarz M, Choi SB, Barton MK, Reinhart BJ, Liu T, Quint M, Palauqui JC, Martínez-García JF and Wenkel S (2012). Genome-wide binding-site analysis of REVOLUTA reveals a link between leaf patterning and light-mediated growth responses. Plant J 72, 31-42. Doi: 10.1111/j.1365-313X.2012.05049.x.
  • Galstyan A, Bou-Torrent J, Roig-Villanova I and Martínez-García JF© (2012). A dual mechanism controls nuclear localization in the atypical basic-helix-loop-helix protein. Molecular Plant 5, 669-677. Doi: 10.1093/mp/sss006.
  • Bou-Torrent J, Martínez-García JF, García-Martínez JL and Prat S (2011). Gibberellin A1 metabolism contributes to the control of photoperiod-mediated tuberization in potato. PLoS One 6, e24458. Doi: 10.1371/journal.pone.0024458.
  • Josse EM, Gan Y, Bou-Torrent J, Stewart KL, Gilday AD, Jeffree CE, Vaistij FE, Martínez-García JF, Nagy F, Graham IA and Halliday KJ (2011). A DELLA in disguise: SPATULA restrains the growth of the developing seedling. Plant Cell 23, 1337-1351. Doi: 10.1105/tpc.110.082594.
  • Wang X, Roig-Villanova I, Khan S, Sanan H, Quail PH, Martinez-Garcia JF and Devlin PF (2011). A novel high throughput in vivo molecular screen for shade avoidance mutants identifies a novel phyA mutation. J Exp Bot 62, 2973-2987. Doi: 10.1093/jxb/err062.
  • Galstyan A, Cifuentes-Esquivel N, Bou-Torrent J and Martínez-García JF© (2011). The shade avoidance syndrome in Arabidopsis: a fundamental role for atypical bHLH proteins as transcriptional cofactors. Plant J 66, 258-267. Doi: 10.1111/j.1365-313X.2011.04485.x.
  • Carretero-Paulet L, Galstyan A, Roig-Villanova I, Martínez-García JF, Bilbao-Castro JR and Robertson DL. (2010). Genome wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss and algae. Plant Physiol 153, 1398-1412. Doi: 10.1104/pp.110.153593.
  • Martínez-García JF©, Galstyan A, Salla-Martret M, Cifuentes-Esquivel N, Gallemí M and Bou-Torrent J. (2010). Regulatory components of shade avoidance syndrome. Adv Bot Res 53, 65-116. Doi: 10.1016/S0065-2296(19)53003-9.
  • Galstyan A and Martínez-García JF© (2010). “Light Signalling in Plant Development”. In: Plant Developmental Biology – Biotechnological Perspectives. Volume 2 (eds. Eng Chong Pua and Michael R. Davey); pp 255-274. Springer, Berlin Heidelberg, Germany. ISBN 978-3-642-02301-9.
  • Martínez-García JF© i Bou-Torrent J (2010). “Plantes transgèniques en recerca”. In: La genètica molecular i els OGMs en agronomia. (Ed. Josep M. Casacuberta). Treb. Soc. Cat. Biol 61. Doi: 10.2436/20.1501.02.91.
  • Sorin C, Salla-Martret M, Bou-Torrent J, Roig-Villanova I and Martínez-García JF© (2009). ATHB4, a regulator of shade avoidance, modulates hormone response in Arabidopsis seedlings. Plant J 59, 266-277. Doi: 10.1111/j.1365-313X.2009.03866.x
  • Halliday KJ, Martínez-García JF and Josse E-M (2009). “Integration of Light and Auxin Signaling”. Cold Spring Harb Perspect Biol 1: a001586 . Doi: 10.1101/cshperspect.a001586.
  • Jasinski S, Tattersall A, Piazza P, Hay A, Martinez-Garcia JF, Schmitz G, Theres K, McCormick S and Tsiantis M (2008). PROCERA encodes a DELLA protein that mediates control of dissected leaf form in tomato. Plant J 56, 603-612. Doi: 10.1111/j.1365-313X.2008.03628.x
  • Bou-Torrent J, Roig-Villanova I and Martínez-García JF© (2008). Light signaling: back to space. Trends Plant Sci 13, 108-114. Doi: 10.1016/j.tplants.2007.12.003.
  • Roig-Villanova I*, Bou-Torrent J*, Galstyan A, Carretero-Paulet L, Portolés S, Rodríguez-Concepción M and Martínez-García JF© (2007). Interaction of shade avoidance and auxin responses: a role for two novel atypical bHLH proteins. EMBO J 26, 4756-4767.
  • Roig-Villanova I, Bou J, Sorin C, Devlin PF and Martínez-García JF© (2006). Identification of primary target genes of phytochrome signalling: early transcriptional control during shade avoidance responses in Arabidopsis. Plant Physiol 141, 85-96.
  • Sauret-Güeto S, Botella-Pavía P, Flores-Pérez U, Martínez-García JF, San Román C, León P, Boronat A and Rodríguez-Concepción M (2006). Plastid cues post-transcriptionally regulate the accumulation of key enzymes of the methylerythritol phosphate pathway in Arabidopsis. Plant Physiol 141, 75-84.
  • Rodríguez-Concepción M, Forés O, Martínez-García JF, González V, Phillips MA, Ferrer A and Boronat A (2004). Distinct light-mediated pathways regulate the biosynthesis and exchange of isoprenoid precursors during Arabidopsis thaliana seedling development. Plant Cell 14, 144-156.
  • Monte E, Amador V, Russo E, Martínez-García JF and Prat S (2003). PHOR1: A U-box GA signaling component with a role in proteasome degradation?. J Plant Growth Regul 22, 152-162.
  • Bou J, Virgos A, Martínez-García J and Prat S (2003). “Potato tuberization: evidence for a SD-dependent and a gibberellin-dependent pathway of induction”. In: Phytohormones in Plant Biotechnology and Agriculture (eds. I. Machackova and GA Romanov). Kluwer Academic Publishers, Dordrecht. ISBN 1402017235.
  • Martínez-García JF©, Virgós-Soler A and Prat S (2002). Control of photoperiod-regulated tuberization in potato by the Arabidopsis flowering-time gene CONSTANS. Proc Natl Acad Sci USA 99, 15211-15216.
  • Martínez-García JF, García-Martínez JL, Bou J and Prat S (2002) The interaction of gibberellins in the photoperiod controlled potato tuberization. J Plant Growth Regul 20, 377-386.
  • Martínez-García JF, Huq E and Quail PH (2000). Direct targeting of light signals to a promoter-element-bound transcription factor. Science 288, 859-863.
  • Martínez-García JF, Santes CM and García-Martínez JL (2000). The end-of-day far-red irradiation increases gibberellin A1 content in cowpea (Vigna sinensis L.) by reducing its inactivation. Physiol Plant 108, 426-434.

Thesis

– PhD thesis, Margalida VIDAL TUR, in progress (started in 2023) – Universitat Politècnica de València (UPV). Supervised by Jaume Martínez-García
– PhD thesis, Alexa AGUILAR ACEVEDO, in progress (started in 2023) – Universitat Politècnica de València (UPV). Supervised by Jaume Martínez-García
– Master thesis, Andrea GARCÍA HERNÁNDEZ, in progress.  Universitat Politènica de València (UPV), Master of Plant Biology, Genomics and Biotechnology. Supervised by Jaume Martínez-García
– PhD thesis, Ángela SÁNCHEZ GARCÍA, in progress (started in 2022) – Universitat Politècnica de València (UPV). Supervised by Jaume Martínez-García
– PhD thesis, Mikel URDÍN BRAVO, in progress (started in 2021) – Universitat Politècnica de València (UPV). Co-supervised by Jaume Martínez-García and Manuel Rodriguez-Concepción

– PhD thesis, Julia PALAU RODRIGUEZ, in progress (started in 2021) – Universitat Politècnica de València (UPV). Supervised by Jaume Martínez-García


PhD thesis, Wenting QIN. Defended in 18/11/2022 – Universitat Autònoma de Barcelona (UAB). “Molecular basis of shade tolerance: identification of novel components”. Supervised by Jaume Martínez-García

– Master thesis, Ángela SÁNCHEZ GARCÍA (defended in 01/2022) – Universitat Politènica de València (UPV), Master of Plant Biology, Genomics and Biotechnology. “Comparative analyses between shade-avoider and shade-tolerant species: the role of phytochrome B”. Supervised by Jaume Martínez-García


– PhD thesis, Pedro PASTOR ANDREU. Defended in 17/12/2021 – Universitat Autònoma de Barcelona (UAB). “Mechanistic, temporal and spatial insights of the regulatory network controlling plant responses to vegetation proximity”. Co-supervised by Jaume Martínez-García and Jordi Moreno-Romero

– Master thesis, Cèlia ANTÓN SALES, defended on 2020/09 – UB-UAB-CRAG, Master of Plant Biology, Genomics and Biotechnology. “Characterization of Dark-Induced Senescence and its association with vegetation proximity responses in plants”. Supervised by Jaume Martínez-García

– Master thesis, Hugo SOMOZA VÁZQUEZ, defended on 2018/09 – UAB-UB-CRAG, Master of Plant Biology, Genomics and Biotechnology. “Epigenetic control of Arabidopsis thaliana shade response: role of LIKE HETEROCHROMATIN PROTEIN1 as a transcriptional regulator”. Co-supervised by Jaume Martínez-García and Jordi Moreno-Romero


– Master thesis, Renze JACOBI, defended in 2019/09 – Universitat Autònoma de Barcelona, Universitat de Barcelona y CRAG (Master of Plant Biology, Genomics and Biotechnology). “The role of LIKE HETEROCHROMATIN PROTEIN1 in the shade response in Arabidopsis thaliana“.
Co-supervised by Jaume Martínez-García and Jordi Moreno-Romero

– PhD thesis, Sandi PAULISIC, defended in 2018/07 – Universitat Autònoma de Barcelona. “Mechanistic and genetic regulation of plant responses to vegetation proximity: the roles of DRACULA2 and HFR1”. Supervised by Jaume Martínez-García

– Master thesis, Cristina VILARMAU MARSINYACH, defended in September 2018 – Universitat Pompeu Fabra (UPF), Master in Biomedical Research. “Comparative genetic analyses between two mustard species to understand divergent plant responses to vegetation proximity. Supervised by Jaume Martínez-García

PhD thesis, Maria José MOLINA CONTRERAS, defended in 2017/09 – Universitat de Barcelona (UB). “Regulación de las respuestas a la proximidad vegetal en Arabidopsis thaliana y especies afines”. Co-supervised by Jaume Martínez-García and Irma Roig-Villanova

– Master thesis, Violeta SANCHEZ RETUERTA, defended in 2017/09 – Universitat Autònoma de Barcelona (UAB), Master in Plant Biology and Biotechnology.  “Molecular components involved in the establishment of shade tolerance in relatives of Arabidopsis thaliana“. Supervised by Jaume Martínez-García


– Master thesis, Estefanía LÓPEZ ORTÍZ, defended in 2017/09, Universitat Autònoma de Barcelona (UAB),  Master in Plant Biology and Biotechnology. “Analysis of phenotypic changes in the reproductive tissues of Arabidopsis thaliana in response to shade”. Co-supervised by Jaume Martínez-García and Irma Roig-Villanova

– Master thesis, Benjamin ALARY, defended in 2017/06 – Université Clemont Auvergne (Master II Biologie et Environnment, Specialité: Génomique, Ecophysiologie et Production Végétales), France. “Seedling responses to vegetation proximity: focus on PIF7 molecular mechanisms”. Supervised by Jaume Martínez-García


 – Master thesis, Daniela VARGAS PEÑAFIEL (Daniela passed away in September 2017 when she was already back in Ecuador – I’d like to remember her in here), defended in 2014/06 – Universitat Autònoma de Barcelona (UAB), Master in Biochemistry, Molecular Biology and Biomedicine. “Estudio funcional de componentes de la vía de señalización del phyA en la tolerancia a la sombra vegetal en Cardamine hirsuta“. Supervised by Jaume Martínez-García

 – PhD thesis, Marçal GALLEMÍ ROVIRA, defended in 2013/12 – Universitat de Barcelona (UB). “Aproximació als mecanismes moleculars implicats en la regulació de la síndrome de fugida de l’ombra en Arabidopsis”. Supervised by Jaume Martínez-García

– PhD thesis, Nicolás A. CIFUENTES ESQUIVEL, defended in 2013/01 – Universitat de Barcelona (UB). ” Análisis de la interconexión entre rutas transcripcionales hormonales y del síndrome de huida de la sombra de Arabidopsis”. Supervised by Jaume Martínez-García

– Master thesis, Laura LORENZO ORTS, defended in 2013/06 – Universitat Autònoma de Barcelona (UAB), Master in Plant Biology and Biotechnology. “Las nucleoporinas poseen un papel específico y particular en la regulación de la expresión génica de Arabidopsis thaliana“. Supervised by Jaume Martínez-García

– PhD thesis, Mercè SALLA MARTRET, defended in 2012/09 – Universitat de Barcelona (UB). “Control hormonal i genètic de la síndrome de fugida de l’ombra en Arabidopsis thaliana“. Supervised by Jaume Martínez-García

 – PhD thesis, Anahit GALSTYAN, defended in 2011/02 – Universitat de Barcelona (UB). “”Identificación y caracterización de componentes del síndrome de huida de la sombra en Arabidopsis thaliana“. Supervised by Jaume Martínez-García

– Master thesis, Maria José MOLINA CONTRERAS, defended in 2011/09 – Universitat Autònoma de Barcelona (UAB), Master in Plant Biology and Biotechnology. “Nuevas estrategias en el estudio del síndrome de huida de la sombra en Arabidopsis thaliana“. Co-supervised by Jaume Martínez-García and Jordi Bou-Torrent

– Master thesis, Mercè SALLA MARTRET, defended in 2008/09 – Universitat de Barcelona (UB), Master in Molecular Biotechnology. “Control molecular i fisiològic de la síndrome de fugida de l’ombra en Arabidopsis thaliana“. Supervised by Jaume Martínez-García

– PhD thesis, Irma ROIG VILLANOVA, defended in 2007/09 – Universitat de Barcelona (UB). “Control molecular y fisiològic de la síndrome de fugida de l’ombra en Arabidopsis thaliana”. Supervised by Jaume Martínez-García